Issues · scverse/scvi-tools · GitHub

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Model request: scPhere (hyperspherical / hyperbolic latent embedding for scRNA-seq)

#3839

· nataliaMalicka opened

on Jun 9, 2026

MultiVI MuData setup rejects unpaired observations despite model supporting missing modalities

#3834

· catheriz opened

on Jun 7, 2026

Add `weighted_knn_trainer`/`weighted_knn_transfer` utilities from scArches

#3819

· seohyonkim opened

on May 19, 2026

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Direct `csr` sparse ops support

#3759

· ilan-gold opened

on Mar 23, 2026

Allow custom label_key for scib-metrics in scvi.autotune

#3647

· catheriz opened

on Dec 14, 2025

Use scverse template

#3600

· Zethson opened

on Nov 14, 2025

Training models with torch.Tensor input

#2736

· j-bac opened

on Apr 22, 2024

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PyroModelGuideWarmup fails on GPU - probably need to be manually run before `trainer.fit()`

#2616

· vitkl opened

on Mar 18, 2024

MultiVI with Poisson/NB likelihood for ATAC?

#2257

· vitkl opened

on Sep 6, 2023

Model request: non-negative spatial factorization (NSF)

#1859

· aribenjamin opened

on Jan 18, 2023

Finalize scBasset

#1840

· adamgayoso opened

on Jan 9, 2023

Some suggestion about GNN

#1789

· HuangDDU opened

on Nov 16, 2022

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