Update and lint GitHub Action workflows

.github/actionlint.yaml

@@ -0,0 +1,3 @@
+self-hosted-runner:
+  labels:
+    - precice-tests-vm

.github/workflows/check-style.yml

@@ -13,25 +13,13 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout the repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
       - name: Setup python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
          python-version: '3.10'
          check-latest: true
       - name: Install pre-commit
         run: pip install pre-commit
       - name: Run checks
         run: pre-commit run -a
-      - name: Git status
-        if: always()
-        run: |
-          echo -e '### Status\n```text' >> $GITHUB_STEP_SUMMARY
-          git status | tee -a $GITHUB_STEP_SUMMARY
-          echo '```' >> $GITHUB_STEP_SUMMARY
-      - name: Full diff
-        if: always()
-        run: |
-          echo -e '### Diff\n```diff' >> $GITHUB_STEP_SUMMARY
-          git diff | tee -a $GITHUB_STEP_SUMMARY
-          echo '```' >> $GITHUB_STEP_SUMMARY

.github/workflows/generate_reference_results_workflow.yml

@@ -17,7 +17,6 @@ on:
         type: string
       log_level:
         description: 'Logging verbosity level used for the systemtests'
-        default: 'INFO'
         required: true
         type: string
 jobs:
@@ -43,7 +42,7 @@ jobs:
         rm -rf ./.??*
         ls -la ./
     - name: Check out Tutorials for the system tests (tools/tests/)
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         ref: ${{ inputs.from_ref }}
         lfs: true
@@ -85,18 +84,18 @@ jobs:
         fi
         git commit -m "${{inputs.commit_msg}}"
         git push
+    - name: Archive run files
+      if: failure()
+      uses: actions/upload-artifact@v7
+      with:
+        name: system_tests_run_${{ github.run_id }}_${{ github.run_attempt }}_reference_full
+        path: |
+          runs/*
     - name: Archive main log files
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v7
       with:
         name: system_tests_run_${{ github.run_id }}_${{ github.run_attempt }}_reference_logs
         path: |
           runs/*/system-tests-stdout.log
           runs/*/system-tests-stderr.log
           runs/*/*/system-tests_*.log
-    - name: Archive run files
-      if: failure()
-      uses: actions/upload-artifact@v4
-      with:
-        name: system_tests_run_${{ github.run_id }}_${{ github.run_attempt }}_reference_full
-        path: |
-          runs/*

.github/workflows/run_testsuite_workflow.yml

@@ -12,7 +12,6 @@ on:
         type: string
       system_tests_branch:
         description: 'Branch to take the system tests from'
-        default: 'develop'
         required: true
         type: string
       log_level:
@@ -39,17 +38,19 @@ jobs:
         echo "python3 systemtests.py --build_args=${{inputs.build_args}} --suites=${{ inputs.suites}}"
     - name: Prepare the Markdown step summary
       run: |
-        echo "Job inputs:" >> $GITHUB_STEP_SUMMARY
-        echo "- Initiated by: @${{ github.actor }}" >> $GITHUB_STEP_SUMMARY
-        echo "- Test suites: \`${{ inputs.suites}}\`" >> $GITHUB_STEP_SUMMARY
-        echo "- System tests branch (\`tools/\`): [\`${{ inputs.system_tests_branch }}\`](https://github.com/precice/tutorials/tree/${{ inputs.system_tests_branch }})" >> $GITHUB_STEP_SUMMARY
-        echo "- System tests log level: \`${{ inputs.log_level }}\`" >> $GITHUB_STEP_SUMMARY
-        echo "- Uploading the runs folder on success: \`${{ inputs.upload_artifacts }}\`" >> $GITHUB_STEP_SUMMARY
-        echo "" >> $GITHUB_STEP_SUMMARY
-        echo "Running the following command inside \`tutorials/tools/\`:" >> $GITHUB_STEP_SUMMARY
-        echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-        echo "python3 systemtests.py --build_args=${{inputs.build_args}} --suites=${{ inputs.suites}}" >> $GITHUB_STEP_SUMMARY
-        echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
+        {
+          echo "Job inputs:"
+          echo "- Initiated by: @${{ github.actor }}"
+          echo "- Test suites: \`${{ inputs.suites}}\`"
+          echo "- System tests branch (\`tools/\`): [\`${{ inputs.system_tests_branch }}\`](https://github.com/precice/tutorials/tree/${{ inputs.system_tests_branch }})"
+          echo "- System tests log level: \`${{ inputs.log_level }}\`"
+          echo "- Uploading the runs folder on success: \`${{ inputs.upload_artifacts }}\`"
+          echo ""
+          echo "Running the following command inside \`tutorials/tools/\`:"
+          echo "\`\`\`"
+          echo "python3 systemtests.py --build_args=${{inputs.build_args}} --suites=${{ inputs.suites}}"
+          echo "\`\`\`"
+        } >> "$GITHUB_STEP_SUMMARY"
     - name: Move LFS URL to local LFS server
       run: |
         /home/precice/runners_root/scripts/make_lfs_local.sh
@@ -60,7 +61,7 @@ jobs:
         rm -rf ./.??*
         ls -la ./
     - name: Check out Tutorials for the system tests (tools/tests/)
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         repository: precice/tutorials
         ref: ${{ inputs.system_tests_branch }}
@@ -77,21 +78,21 @@ jobs:
         cd tools/tests
         python systemtests.py --build_args=${{ inputs.build_args}} --suites=${{ inputs.suites}} --log-level=${{ inputs.log_level}}
         cd ../../
+    - name: Archive run files
+      if: ${{  failure() || inputs.upload_artifacts == 'TRUE' }}
+      uses: actions/upload-artifact@v7
+      with:
+        name: system_tests_run_${{ github.run_id }}_${{ github.run_attempt }}_full
+        path: |
+          runs/*
     - name: Archive main log files
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v7
       with:
         name: system_tests_run_${{ github.run_id }}_${{ github.run_attempt }}_logs
         path: |
           runs/*/system-tests-stdout.log
           runs/*/system-tests-stderr.log
           runs/*/*/system-tests_*.log
-    - name: Archive run files
-      if: ${{  failure() || inputs.upload_artifacts == 'TRUE' }}
-      uses: actions/upload-artifact@v4
-      with:
-        name: system_tests_run_${{ github.run_id }}_${{ github.run_attempt }}_full
-        path: |
-          runs/*
     - name: tidy up the docker
       run: |
         docker network prune -f

.github/workflows/system-tests-cleanup.yml

@@ -3,6 +3,7 @@ name: System tests cleanup
 on:
   schedule:
     - cron: "0 3 1 * *"
+      timezone: "Europe/Berlin"
   workflow_dispatch:
 
 jobs:

.github/workflows/system-tests-latest-components.yml

@@ -3,6 +3,7 @@ name: System tests (latest components)
 on:
   schedule:
     - cron: "0 4 * * *"
+      timezone: "Europe/Berlin"
   workflow_dispatch:
 
 jobs:
@@ -98,61 +99,63 @@ jobs:
       - id: summary
         name: Prepare Markdown summary
         run: |
-          echo "## Git references of latest (develop) components" >> $GITHUB_STEP_SUMMARY
-          echo "### preCICE" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-precice.outputs.shorthash }}\`](https://github.com/precice/precice/commit/${{ steps.ref-precice.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-precice.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### Python bindings" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-python-bindings.outputs.shorthash }}\`](https://github.com/precice/python-bindings/commit/${{ steps.ref-python-bindings.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-python-bindings.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### CalculiX adapter" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-calculix-adapter.outputs.shorthash }}\`](https://github.com/precice/calculix-adapter/commit/${{ steps.ref-calculix-adapter.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-calculix-adapter.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### DuMux adapter" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-dumux-adapter.outputs.shorthash }}\`](https://github.com/precice/dumux-adapter/commit/${{ steps.ref-dumux-adapter.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-dumux-adapter.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### FEniCS adapter" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-fenics-adapter.outputs.shorthash }}\`](https://github.com/precice/fenics-adapter/commit/${{ steps.ref-fenics-adapter.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-fenics-adapter.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### Micro-Manager" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-micro-manager.outputs.shorthash }}\`](https://github.com/precice/micro-manager/commit/${{ steps.ref-micro-manager.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-micro-manager.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### OpenFOAM adapter" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-openfoam-adapter.outputs.shorthash }}\`](https://github.com/precice/openfoam-adapter/commit/${{ steps.ref-openfoam-adapter.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-openfoam-adapter.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### SU2 adapter" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-su2-adapter.outputs.shorthash }}\`](https://github.com/precice/su2-adapter/commit/${{ steps.ref-su2-adapter.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-su2-adapter.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "### Tutorials" >> $GITHUB_STEP_SUMMARY
-          echo "Reference: [\`${{ steps.ref-tutorials.outputs.shorthash }}\`](https://github.com/precice/tutorials/commit/${{ steps.ref-tutorials.outputs.shorthash }})" >> $GITHUB_STEP_SUMMARY
-          echo "Description:" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
-          echo "${{ steps.ref-tutorials.outputs.description }}" >> $GITHUB_STEP_SUMMARY
-          echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
+          {
+            echo "## Git references of latest (develop) components"
+            echo "### preCICE"
+            echo "Reference: [\`${{ steps.ref-precice.outputs.shorthash }}\`](https://github.com/precice/precice/commit/${{ steps.ref-precice.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-precice.outputs.description }}"
+            echo "\`\`\`"
+            echo "### Python bindings"
+            echo "Reference: [\`${{ steps.ref-python-bindings.outputs.shorthash }}\`](https://github.com/precice/python-bindings/commit/${{ steps.ref-python-bindings.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-python-bindings.outputs.description }}"
+            echo "\`\`\`"
+            echo "### CalculiX adapter"
+            echo "Reference: [\`${{ steps.ref-calculix-adapter.outputs.shorthash }}\`](https://github.com/precice/calculix-adapter/commit/${{ steps.ref-calculix-adapter.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-calculix-adapter.outputs.description }}"
+            echo "\`\`\`"
+            echo "### DuMux adapter"
+            echo "Reference: [\`${{ steps.ref-dumux-adapter.outputs.shorthash }}\`](https://github.com/precice/dumux-adapter/commit/${{ steps.ref-dumux-adapter.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-dumux-adapter.outputs.description }}"
+            echo "\`\`\`"
+            echo "### FEniCS adapter"
+            echo "Reference: [\`${{ steps.ref-fenics-adapter.outputs.shorthash }}\`](https://github.com/precice/fenics-adapter/commit/${{ steps.ref-fenics-adapter.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-fenics-adapter.outputs.description }}"
+            echo "\`\`\`"
+            echo "### Micro-Manager"
+            echo "Reference: [\`${{ steps.ref-micro-manager.outputs.shorthash }}\`](https://github.com/precice/micro-manager/commit/${{ steps.ref-micro-manager.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-micro-manager.outputs.description }}"
+            echo "\`\`\`"
+            echo "### OpenFOAM adapter"
+            echo "Reference: [\`${{ steps.ref-openfoam-adapter.outputs.shorthash }}\`](https://github.com/precice/openfoam-adapter/commit/${{ steps.ref-openfoam-adapter.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-openfoam-adapter.outputs.description }}"
+            echo "\`\`\`"
+            echo "### SU2 adapter"
+            echo "Reference: [\`${{ steps.ref-su2-adapter.outputs.shorthash }}\`](https://github.com/precice/su2-adapter/commit/${{ steps.ref-su2-adapter.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-su2-adapter.outputs.description }}"
+            echo "\`\`\`"
+            echo "### Tutorials"
+            echo "Reference: [\`${{ steps.ref-tutorials.outputs.shorthash }}\`](https://github.com/precice/tutorials/commit/${{ steps.ref-tutorials.outputs.shorthash }})"
+            echo "Description:"
+            echo "\`\`\`"
+            echo "${{ steps.ref-tutorials.outputs.description }}"
+            echo "\`\`\`"
+          } >> "$GITHUB_STEP_SUMMARY"
 
   run-system-tests:
     name: Trigger system tests