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refactor: extract shared platform-default-path helper in config.ts#1856

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carlos-alm merged 23 commits into
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fix/issue-1746-config-dedupe-platform-path
Jul 6, 2026
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refactor: extract shared platform-default-path helper in config.ts#1856
carlos-alm merged 23 commits into
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fix/issue-1746-config-dedupe-platform-path

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Summary

  • getDefaultUserConfigPath() and resolveUserConfigPath() duplicated the same XDG_CONFIG_HOME / Windows %APPDATA% / ~/.config three-way branch.
  • Extracted into a shared private helper computePlatformDefaultConfigPath(home); both functions now call it. resolveUserConfigPath() still layers its own existsSync checks on top, unchanged. Pure dedup — priority order and path shapes preserved exactly.

Closes #1746

Test plan

  • npm test — full suite green (3490 passed, 0 failed)
  • npm run lint — clean
  • tests/unit/config-user.test.ts (27 tests covering resolveUserConfigPath) unaffected

Stacked on #1854 (base branch fix/issue-1745-remote-embed-json-error) — only the config.ts diff is this issue's change.

carlos-alm added 22 commits July 5, 2026 11:24
BATCH_COMMANDS entries with sig: 'dbOnly' (currently only complexity)
always wrote their target into opts.target. complexityData treats
opts.target as a symbol-name filter and opts.file as the file-path
filter, so batch complexity <file> never matched anything and the
function list silently fell back to empty with a whole-repo summary
regardless of which file was requested.

Add an optional targetKey on BatchCommandEntry so each dbOnly command
can declare which opts key its targets map to, and set it to 'file'
for complexity. batchData and multiBatchData now route the target
through the declared key instead of assuming opts.target.

Fixes #1721

Impact: 4 functions changed, 6 affected
…ssification

codegraph roles --role dead flagged every function parameter as dead-leaf and
every interface/type member as dead-unresolved, regardless of actual usage.

Root cause: the role classifier's fan-in-based "no callers = dead" heuristic
is meaningless for these two symbol categories, since neither can ever have
inbound call edges by construction:

- Parameters: `kind = 'parameter'` nodes were unconditionally force-assigned
  dead-leaf via a fast-path bypass in classifyNodeRolesFull/Incremental (TS)
  and do_classify_full/do_classify_incremental (native), before any fan-in
  was even computed. A parameter's liveness is a local dataflow question (is
  it referenced within its own function body), not a call-graph reachability
  question, so this produced ~90% noise in --role dead output.

- Interface/type members: every language extractor qualifies interface/type
  members as `Owner.member` top-level definitions (mirroring class method
  qualification), and they never receive inbound call edges (they're
  consumed via type annotations, not calls). Lacking any recognition of
  this, they fell through the normal fan-in/fan-out path and landed in
  dead-unresolved.

Fix:
- Parameters are now fully excluded from role classification (role stays
  NULL), the same treatment already given to file/directory nodes.
- Interface/type members are now recognized in the classifier by resolving
  the Owner.member prefix against same-file TYPE_DEF_KINDS declarations
  (interface/type/struct/enum/trait/record) and classified `leaf`
  unconditionally. Class methods use the identical Owner.member naming
  convention but are unaffected since `class` is not in TYPE_DEF_KINDS, so
  real dead methods/functions remain detected.

Applied to both the TS/WASM classifier (graph/classifiers/roles.ts,
features/structure.ts) and the native Rust classifier
(graph/classifiers/roles.rs) per the dual-engine parity requirement; verified
both engines produce identical results end-to-end against this repo's own
graph.

Fixes #1723

Impact: 6 functions changed, 5 affected
codegraph exports <file> --json (and the --unused dead-export filter it
feeds) reported zero consumers for interfaces/types that are demonstrably
imported and used elsewhere via `import type { X }`, even though
`codegraph deps <file>` correctly showed the importing file in
`importedBy`. Example: ChaContext in src/domain/graph/builder/cha.ts is
imported (type-only) by build-edges.ts and native-orchestrator.ts, but
`codegraph exports` showed consumerCount: 0.

Root cause: exportsFileImpl's per-symbol consumers query
(domain/analysis/exports.ts) only looked at kind = 'calls' edges. The
builder already emits a symbol-level `imports-type` edge for `import
type { X }` statements (source = importing file node, target = the
specific imported symbol -- see emitTypeOnlySymbolEdges in
build-edges.ts/incremental.ts), which `codegraph deps` reads from, but
the exports consumer query never looked at this edge kind. Role
classification (features/structure.ts) already includes 'imports-type'
in its fan-in formula, so `codegraph roles --role dead` was unaffected --
this was purely a gap in exports's independent consumer list.

Fix: widen the consumers query to `kind IN ('calls', 'imports-type')`,
matching the edge-kind set already used everywhere else in the codebase
for cross-file usage credit (structure.ts, graph-enrichment.ts,
boundaries.ts, dependencies.ts). No native Rust changes needed --
domain/analysis/exports.ts is pure query-layer code that reads the
already-built edges table and has no engine-specific mirror.

Deliberately does NOT add `extends`/`implements`: investigation found
those edges are resolved by symbol name only, with no file/import
scoping (buildClassHierarchyEdges in both build-edges.ts/incremental.ts
and the native emit_hierarchy_edges), so they link same-named
declarations across unrelated files (verified: this repo's own graph has
false `implements`/`extends` edges between unrelated fixture classes
across languages and a `Repository` interface in src/types.ts). Filed
as #1812. Also filed #1813 for a related but distinct gap: `import {
type X }` inline per-specifier modifiers aren't tracked as type-only in
either engine's extractor, so such X still gets no credit even after
this fix.

Added tests/integration/exports.test.ts coverage: an interface consumed
only via a symbol-level `imports-type` edge gets consumerCount >= 1 and
is excluded from --unused, while a genuinely unreferenced interface
still shows 0 consumers.

Verified against this repo's own graph: `codegraph exports
src/domain/graph/builder/cha.ts -T --json` now credits ChaContext with
2 consumers (build-edges.ts, native-orchestrator.ts). Full test suite
(201 files, 3359 tests) and lint pass clean.

docs check acknowledged: internal bug fix to exports consumer
computation, no new feature/language/CLI surface/architecture change --
README.md, CLAUDE.md, and ROADMAP.md are unaffected.

Fixes #1724

Impact: 1 functions changed, 3 affected
The CLI's `-f/--file` option is a repeatable Commander accumulator
(collectFile) that always produces a string[], even on first use. The
native composite bindings backing fn-impact (findNodesWithFanIn) and
query (fnDeps) forwarded that array straight into napi-rs functions
whose Rust signatures only accepted a single String, so any use of
-f/--file crashed with "Failed to convert JavaScript value ... into
rust type `String`" regardless of engine defaults. context worked
only because its code path never touches the native repository for
symbol lookup.

Widen the native Rust signatures (find_nodes_with_fan_in, fn_deps) to
accept Vec<String> and build an OR-of-LIKE clause for multiple files,
mirroring buildFileConditionSQL/NodeQuery.fileFilter on the JS side.
Normalize the file option before calling into the native binding on
the TS side, and thread the widened string | string[] type through
QueryOpts, fnDeps's opts, and the call chain down to
findMatchingNodes. This also makes repeated -f/--file genuinely
multi-file end to end for fn-impact/query, matching context's
existing behavior, instead of crashing on any use.

findNodesByScope shares QueryOpts but has no CLI caller and its
native binding still only accepts one file; it now takes the first
value defensively rather than crash or fail to type-check.

Fixes #1726

docs check acknowledged: pure bug fix, no new CLI options/languages/
architecture — the -f/--file "repeatable" docs are now accurate
rather than needing correction.

Impact: 14 functions changed, 34 affected
… exports

Two compounding root causes made `where --file`'s `exported` array (and
`codegraph exports`) unreliable for entire classes of exports:

1. The JS/TS export-statement handler (WASM query path, WASM walk path, and
   the mirrored native Rust extractor) only recognized `export function`,
   `export class`, `export interface`, and `export type` declarations. It
   never matched `lexical_declaration`/`variable_declaration`, so
   `export const/let/var …` was never added to the extractor's export list —
   regardless of the initializer's shape — leaving the `exported=1` DB column
   permanently unset for every exported constant in the codebase (including
   ones that happened to look "correct", like a `new Set(...)`-initialized
   constant referenced as a call argument elsewhere).

2. `where --file`'s `exported` list ignored the `exported` DB column entirely
   and computed membership from `findCrossFileCallTargets` (symbols targeted
   by a cross-file `calls` edge) — a heuristic that only "worked" by
   coincidence for symbols that happened to be passed as call arguments
   elsewhere. `codegraph exports` already had the right idea (prefer the
   `exported` column, fall back to the heuristic only for pre-migration DBs)
   but duplicated that logic locally instead of sharing it.

Fixes:
- src/extractors/javascript.ts: extract the function/class/interface/type
  kind map plus a new lexical/variable-declaration branch into a shared
  `collectExportedDeclarations`, used by both `handleExportCapture` (query
  path) and `handleExportStmt` (walk path) so they can't drift apart again.
  Declarator values are classified with the same predicate already used to
  build the matching Definition (function-valued -> kind 'function',
  literal/array/object/new-expression-valued `const` -> kind 'constant').
- crates/codegraph-core/src/extractors/javascript.rs: mirror the same fix in
  `handle_export_declaration` via a new `collect_exported_var_declarations`.
- src/db/repository/nodes.ts: add `findExportedNodesByFile`, the single
  shared implementation of "prefer exported=1, fall back to cross-file calls
  for pre-migration DBs" — re-exported through db/repository/index.ts and
  db/index.ts.
- src/domain/analysis/exports.ts: use the shared helper instead of a locally
  duplicated hasExportedCol/exportedNodesStmt implementation.
- src/domain/analysis/symbol-lookup.ts: `whereFileImpl` now uses the shared
  helper instead of `findCrossFileCallTargets` directly, so `where --file`
  and `exports` agree on what "exported" means.

Tests:
- tests/parsers/javascript.test.ts: unit coverage for bare-literal, new
  Set(...), object-literal-with-methods, and arrow-function exported consts,
  plus a non-exported-const negative case and a function/class regression
  guard for the shared-helper refactor.
- tests/engines/query-walk-parity.test.ts, tests/engines/parity.test.ts:
  cross-path/cross-engine regression cases for the same shapes.
- tests/integration/queries.test.ts: new fixture node with exported=1 but
  zero incoming edges of any kind, proving `where --file`'s exported list
  no longer depends on cross-file call presence.

No user-facing command/language/architecture changes, so README/CLAUDE.md/
ROADMAP.md are unaffected — docs check acknowledged.

Fixes #1728

Impact: 8 functions changed, 17 affected
tree-sitter-typescript's predefined_type production (string, number,
boolean, ... primitive type keywords) lexes its keyword as an anonymous
grammar token whose type string is identical to the named `string` node
type used for real string literals. Both engines matched by node type
alone, so `codegraph ast --kind string` spuriously matched bare `string`
type annotations (interface fields, parameter types, return types) as if
they were string literals.

Add an isNamed/is_named() guard scoped to the JS/TS/TSX family on both
engines: WASM via astRequiresNamedNode() in ast-analysis/rules/index.ts
feeding the shared resolveAstKind() in ast-store-visitor.ts, native via a
match guard in javascript.rs's walk_ast_nodes_depth. Genuine string,
template, and string-literal-type nodes are always named and unaffected.

No user-facing command/language/architecture changes, so README/CLAUDE.md/
ROADMAP.md are unaffected — docs check acknowledged.

Fixes #1729

Impact: 8 functions changed, 13 affected
codegraph exports <file> reported zero consumers for an exported
function/symbol that is genuinely imported and used elsewhere, whenever
the importing file renamed the binding at the import site
(import { X as Y } from '...'). Example: collectFiles in
src/domain/graph/builder/helpers.ts is imported (as collectFilesUtil)
and called by collect-files.ts and native-orchestrator.ts, but
`codegraph exports helpers.ts -T --json` showed consumerCount: 0.

Root cause (extractor, both engines): extractImportNames (javascript.ts)
and its mirrored scan_import_names_depth (javascript.rs) handled
import_specifier nodes with `node.childForFieldName('name') ||
childForFieldName('alias')`. Per the tree-sitter grammar, `name` is
*always* present on import_specifier (the name as declared by the source
module); `alias` only exists for `X as Y` and holds the *local* binding
actually referenced by call sites. Preferring `name` unconditionally
meant the local alias was silently dropped for every renamed import —
`imp.names` recorded "collectFiles" instead of "collectFilesUtil", so
`importedNames` (keyed by call-site text) never had a matching entry and
the call fell through unresolved.

Fixing only the extractor was not sufficient: once `imp.names` correctly
holds the local alias, `resolveCallTargets` (call-resolver.ts) /
resolve_call_targets (build_edges.rs) still searched the *target file*
for a symbol literally named "collectFilesUtil" — which doesn't exist
there (only "collectFiles" does). This required threading a second
piece of information end-to-end: for each renamed specifier, the local
alias's *original* exported name, so target-file/barrel lookups search
by the right name while importedNames stays keyed by the call-site text.

Changes (both engines, full-build + incremental/native-orchestrator +
native-hybrid paths):
- types.ts / types.rs: new `Import.renamedImports` /
  `Import.renamed_imports` field — { local, imported } pairs, populated
  only for specifiers that actually rename a binding.
- extractors/javascript.ts, .rs: extractImportNames /
  extract_import_names_with_renames now prefer `alias` (local binding)
  for import_specifier and record the rename pair. export_specifier is
  deliberately left unchanged (see scope notes below). Fixed in both the
  walk path (handleImportStmt) and the query/WASM-worker path
  (handleImportCapture) on the TS side.
- build-edges.ts, build_edges.rs, import_edges.rs, pipeline.rs,
  call-resolver.ts, incremental.ts: buildImportedNamesMap /
  collect_imported_names_for_file now also produce a local-alias ->
  original-name map; resolveCallTargets / resolve_call_targets consult
  it to search the target file by the original name. Applied
  consistently to the primary call-resolution path, the
  Object.defineProperty post-pass, points-to alias resolution, barrel
  edge / import-type edge emission, and cross-file return-type
  propagation — every place that previously assumed a call site's local
  name equals the target file's declared name.

Native Rust: touched and verified. Rebuilt locally via
`npx napi build --platform --release` (crates/codegraph-core), codesigned
(`codesign --sign - --force`), and installed over the loaded
node_modules/@optave/codegraph-darwin-arm64/codegraph-core.node so the
fix was exercised by the actual native engine, not the prebuilt npm
binary. `cargo test --lib`: 427 passed.

Tests added:
- tests/parsers/javascript.test.ts: extractor-level coverage for the
  local-name/rename-pair extraction, a mixed renamed+non-renamed
  specifier list, and confirmation export_specifier is unaffected.
- crates/codegraph-core/src/extractors/javascript.rs: matching Rust unit
  tests.
- tests/integration/issue-1730-renamed-import-consumer.test.ts: new
  end-to-end test building real files through buildGraph() on both wasm
  and native engines, asserting the calls edge exists, no edge is
  created against a nonexistent "collectFilesUtil" symbol, and
  `codegraph exports` credits the consumer — on both engines.
  tests/integration/exports.test.ts was not extended: that file
  hand-inserts DB rows and only exercises the query layer, which is
  unaffected by this bug (the missing piece was edge creation, not the
  consumer query added for #1724).

Verified against this repo's own graph (native engine, rebuilt):
`codegraph exports src/domain/graph/builder/helpers.ts -T --json` now
credits collectFiles with 2 consumers (collect-files.ts,
native-orchestrator.ts); WASM engine agrees exactly. Without -T, also
picks up tests/unit/builder.test.ts via the (unrenamed) builder.ts
barrel re-export, which already worked pre-fix and was only hidden by
-T in the original repro.

Scope notes — filed as separate issues rather than expanding this fix:
- #1823: export { X as Y } from '...' (barrel re-export with rename) is
  not tracked — resolveBarrelExport/resolve_barrel_export key off the
  original name, and export_specifier extraction was deliberately left
  unchanged here since barrel/reexport tracing is a distinct mechanism.
- #1824: dynamic import destructuring rename
  (const { a: b } = await import(...)) has the same class of bug in
  extractDynamicImportNames, a different extraction function.
- #1825: a renamed import used as a call receiver
  (import { X as Y }; Y.method()) still fails to resolve — confirmed
  empirically (no calls edge created) — a different resolution strategy
  (resolveByReceiver/resolveViaDirectQualifiedMethod in
  resolver/strategy.ts) than the one this fix addresses.

Full test suite (202 files, 3398 tests) and lint pass clean.

docs check acknowledged: internal resolver/extractor bug fix, no new
feature/language/CLI surface/architecture change -- README.md,
CLAUDE.md, and ROADMAP.md are unaffected.

Fixes #1730

Impact: 29 functions changed, 47 affected
… builds

insertNodes committed file_hashes for changed files in the same
transaction as node insertion, before resolveImports/buildEdges rebuilt
those files' edges (a separate, later stage/transaction) — in both the
JS/WASM pipeline and the native Rust orchestrator. Any exception, crash,
or interruption between the two left a hash that claimed a file was
"up to date" while its edges still reflected an older revision. Since
change-detection trusts file_hashes exclusively, that divergence was
never self-healed by later builds.

Defer the file_hashes commit so it only runs once edges have been
rebuilt to match:
- insert-nodes.ts: insertNodes no longer writes file_hashes for changed
  files; new commitFileHashes() does it, called from pipeline.ts after
  buildEdges.
- insert_nodes.rs / pipeline.rs / connection.rs: do_insert_nodes no
  longer upserts file_hashes (only removed-file cleanup, which has no
  coupling risk); new commit_file_hashes() runs after Stage 7 (edges).

Watch-mode's rebuildFile never wrote file_hashes at all, leaving it
permanently stale after every edit — also fixed by writing/deleting the
hash once a file's edges have been rebuilt or the file is deleted.

Adds tests/integration/issue-1731-hash-edge-coupling.test.ts: a
fault-injection test that throws inside buildEdges mid-incremental-build
and asserts the hash does not advance until edges genuinely match (and
that a retry self-heals), plus coverage for rebuildFile keeping
file_hashes in sync with its edge rebuilds.

Fixes #1731

Impact: 8 functions changed, 13 affected
checkNoSignatureChanges compared def.line (post-change, new-file
coordinates, from the rebuilt graph) against diff.oldRanges (pre-change,
old-file coordinates). Any diff that shifts line counts before a given
point in a file — virtually all deletions/insertions — could make an
untouched symbol's new line number coincidentally fall inside the old
hunk's range, producing a false "signature change" violation.

checkMaxBlastRadius already used diff.changedRanges (new-file positions)
against the same db; checkNoSignatureChanges now does the same. The
parameter is renamed from oldRanges to changedRanges to make the expected
coordinate space explicit. diff.oldRanges remains computed by
parseDiffOutput and is still exercised directly by its own tests.

No README/CLAUDE.md/ROADMAP updates needed — internal predicate logic fix,
no new commands, languages, or architecture changes (docs check acknowledged).

Fixes #1732
Fixes #1737

Impact: 2 functions changed, 5 affected
…g WASM grammars

Every git worktree gets its own untracked node_modules/ and grammars/, so a
worktree set up before a host Node upgrade (or where npm install was
interrupted) can end up with a better-sqlite3 binary compiled for the wrong
Node ABI, or an incomplete grammars/ directory — both fail deep inside a
build or test run with confusing, unrelated-looking errors rather than a
clear diagnosis.

Adds src/infrastructure/doctor.ts with two checks whose decision logic is
pure and unit-tested in isolation from the I/O:
- native ABI compatibility, via a real require() attempt
- grammar completeness against the full LANGUAGE_REGISTRY, split by the
  registry's own required flag: a missing required (JS/TS/TSX) grammar fails
  the check, but a missing optional grammar only warns. Non-required parsers
  are designed to fail gracefully at runtime (per this repo's own CLAUDE.md),
  so a worktree missing one rarely-used language's grammar must stay able to
  run npm test, not get hard-blocked before a single test starts.

scripts/doctor.ts is the CLI entry point (npm run doctor, optionally with
--fix for a scoped, worktree-local repair covering both blocking and
non-blocking findings) and is also wired as pretest so npm test fails fast
on a genuinely blocking problem instead of a wall of unrelated failures.

Fixes #1733

docs check acknowledged: CLAUDE.md already covers the new npm run doctor
command and infrastructure/doctor.ts (added in this same change); README.md
does not document npm-run dev scripts (only the shipped codegraph CLI), and
ROADMAP.md has no phase this bug-fix-sized change affects.

Impact: 6 functions changed, 3 affected
`codegraph communities --drift` produced different modularity and
community assignments across separate full rebuilds of byte-identical
source. Two independent, compounding causes in the native Rust engine:

1. The build pipeline collected parsed file symbols into a
   `std::collections::HashMap` (pipeline.rs), whose iteration order is
   randomized per-process. That order drove node/edge insertion order
   into SQLite, so the same file could get a different autoincrement
   `id` (and therefore a different position in the in-memory graph) on
   every rebuild. Fixed by switching `file_symbols` to `BTreeMap`
   throughout the pipeline, import-edge, and structure-metrics stages,
   so insertion order is always sorted by file path.

2. The native Louvain local-move phase (louvain.rs) accumulated
   per-candidate-community weights in a `HashMap`. A genuine tie in
   modularity gain between candidate communities was broken by hashmap
   bucket order instead of a reproducible rule -- non-deterministic even
   with a fixed random seed, since the seed only controls visitation
   order, not this tie-break. Fixed by switching `cur_edges`/`comm_w`
   to `BTreeMap`.

Also added `ORDER BY` to the node/edge read queries used to build the
community-detection graph (both native `graph_read.rs` and the JS/WASM
`graph-read.ts` mirror), as defense in depth: SQLite's row order for a
bare `WHERE` scan is otherwise unspecified.

Verified via 10+ full rebuilds of this repo's own ~900-file graph
producing byte-identical `communities --drift --json` output, versus
differing modularity/community counts on every rebuild beforehand.

This is an internal determinism fix with no new features, commands, or
language support changes, so no README/CLAUDE.md/ROADMAP.md updates are
needed (docs check acknowledged).

Fixes #1734

Impact: 4 functions changed, 17 affected
The PostToolUse hook's hardcoded extension case-statement was a hand-copied
subset of EXTENSIONS (src/shared/constants.ts) that had drifted out of
sync — .mjs/.cjs were missing, so editing those files silently skipped the
incremental rebuild and left .codegraph/graph.db stale.

The hook now prefers dist/hook-extensions.txt, a plain-text snapshot of
EXTENSIONS generated by scripts/gen-hook-extensions.mjs as part of
`npm run build`, checked with a native `grep -qxF` (no extra Node startup
per edit). A synced hardcoded case list remains as a fallback for before
the first build. tests/unit/hook-extensions.test.ts fails if that fallback
ever drifts behind EXTENSIONS again.

This only touches internal dev-tooling (a Claude Code hook and its
build-time codegen script) — no language support, CLI feature, or
architecture surface changed, so README/CLAUDE.md/ROADMAP do not need
updates. docs check acknowledged.

Fixes #1736
…n incremental rebuild

codegraph structure --depth 2 --json reported stale fileCount/symbolCount/
fanIn/cohesion/density for a directory after an incremental rebuild added
or removed a file in it. Only a full rebuild (--no-incremental) produced
correct numbers.

Root cause: the small-incremental fast path (updateChangedFileMetrics in
domain/graph/builder/stages/build-structure.ts, mirrored by
update_changed_file_metrics in crates/codegraph-core/src/features/
structure.rs) only ever updated per-FILE node_metrics rows. It never
touched directories at all -- no directory-metrics recompute, no
`contains` edge for the new file, and no directory node for a brand-new
directory. This path triggers whenever an incremental build touches at
most smallFilesThreshold (5) files and the repo already has more than 20
files -- i.e. almost every normal edit-and-rebuild cycle on a non-trivial
repo, including a pure-removal build (0 parsed files, which trivially
satisfies the "<=5" gate). The full (non-fast-path) incremental branch
was already correct in both engines -- it always recomputes every current
directory's metrics unconditionally.

Fix: added refreshAffectedDirectoryMetrics (build-structure.ts) and its
mirror refresh_affected_directory_metrics (structure.rs), which run
alongside the existing per-file fast path whenever it's taken. They
recompute metrics for the ancestor directories of every file touched by
the build (added, removed, or modified), plus any directory reachable
from them via a live cross-directory import edge (a changed file
gaining/losing an import into a sibling package shifts that package's
fan-in/fan-out too, even though none of its own files changed -- mirrors
the one-hop neighbour-expansion classifyNodeRolesIncremental already does
for role classification). Directory/edge bookkeeping (node creation,
`contains` edges) is wired up idempotently, so a file landing in a
brand-new (possibly multi-level) directory is handled too. All of this
uses indexed point queries against the live DB state, bounded by (changed
files x path depth) rather than repo size, so it stays cheap enough to run
unconditionally on the fast path. getAncestorDirs was promoted from a
features/structure.ts-private helper to shared/constants.ts so both the
fast path and the full path use the same implementation.

Filed #1839 for a narrower residual gap this does not cover: a directory
whose only link to the touched file set was an edge to/from a file that
was itself just removed can't be discovered here, since that edge's
evidence is already deleted by the purge step that runs earlier in the
pipeline.

Verified against the real incremental pipeline (not just unit-level): a
throwaway repro script confirmed the stale fileCount/symbolCount and a
missing `contains` edge for the new file before the fix, and correct,
full-rebuild-matching output after, on both engines (native rebuilt via
napi build + codesign for local verification). Added
tests/integration/issue-1738-structure-metrics-incremental.test.ts, which
diffs incremental-rebuild output against a from-scratch full build of the
identical final file set across add/remove/new-nested-directory/
cross-directory-neighbour scenarios, run against both WASM and native.

npm test: 207 files / 3444 tests passed, 0 failed.
npm run lint: clean.
cargo check / cargo test -p codegraph-core: clean.

This is an internal bug fix to incremental-build correctness -- no new
language support, CLI commands, or architecture surface changed, so
README/CLAUDE.md/ROADMAP.md do not need updates (docs check acknowledged).

Fixes #1738

Impact: 3 functions changed, 8 affected
…n DEFAULTS

Moves the remaining inline maxBuffer magic numbers for git subprocess
calls into DEFAULTS, following the same pattern already applied to
resolveSecrets's apiKeyCommand execFileSync options:

- DEFAULTS.coChange.execMaxBufferBytes (50 MB) — git log in cochange.ts
- DEFAULTS.check.execMaxBufferBytes (10 MB) — git diff in check.ts and
  diff-impact.ts (same operation, shared constant)
- DEFAULTS.build.execMaxBufferBytes (100 MB) — git check-ignore in
  native-orchestrator.ts

Call sites that already had a resolved config in scope (check.ts,
diff-impact.ts, native-orchestrator.ts) now read the value off it so
.codegraphrc.json overrides apply; cochange.ts reads DEFAULTS directly,
matching its existing convention for other coChange fields. No
behavioral change — numeric values are unchanged.

docs check acknowledged: no README/CLAUDE.md/ROADMAP.md updates needed —
this is a config-registration fix with no language/architecture/roadmap
impact; docs/guides/configuration.md was updated with the three new keys.

Fixes #1739

Impact: 10 functions changed, 16 affected
…ng fan-in

checkMaxBlastRadius previously failed any staged change touching a function
whose absolute transitive-caller count exceeded the threshold, regardless of
whether the diff actually changed anything risky. A function reachable only
through a near-universally-called "spine" function (e.g. resolveSecrets via
loadConfig) would fail on any edit at all, including fully behavior-preserving
ones like replacing an inline literal with a named constant.

checkMaxBlastRadius now exempts a touched function from the threshold unless
the diff changed its call graph shape: its own declaration line was touched
(signature/name risk), or the set of paren-preceded tokens referenced in its
body changed (a callee was added, removed, or swapped). This is a mechanical,
diff-text heuristic rather than a full pre/post call-graph reconstruction —
parseDiffOutput now pairs each added-line run with whatever removed text it
replaced (scoped to a single hunk, never crossing hunk boundaries) so the
comparison needs no re-parsing and stays fully synchronous. Missing edit data
(e.g. hand-built ranges) conservatively falls back to the old always-gate
behavior, so this is purely opt-in via real diff data.

Known limitation: paren-less call syntax (Ruby's `foo x, y`, Lua's `foo
"arg"`) is invisible to the token-set comparison, so a newly introduced
paren-less call could be missed and its function wrongly exempted. This is a
deliberate, documented trade-off for a non-parsing check.

Also updates titan-gate SKILL.md Step 8 (both the internal and docs/examples
copies) to defer to Step 1's now-authoritative, shape-aware blast-radius
predicate instead of re-deriving a pass/fail from diff-impact's raw absolute
counts.

No user-facing feature, command, or language changed -- README/ROADMAP left
as-is; docs check acknowledged.

Fixes #1740

Impact: 17 functions changed, 10 affected
…g callees

extractCallbackReferenceCalls (and its native mirror) emitted a dynamic call
edge for every bare identifier argument passed to any call expression, with
no gating on the callee — unlike member_expression args, which were already
gated by CALLBACK_ACCEPTING_CALLEES/HTTP_VERB_CALLEES (#974/#1191). When an
identifier's name collided with an unrelated exported function elsewhere in
the repo, the resolver's global-fallback confidence scoring bound the two
together, fabricating a call edge and, in codegraph's own graph, a phantom
cycle between src/features/communities.ts and src/presentation/communities.ts
(analyzeDrift/communitiesData both call analyzeDrift(communities, ...), where
`communities` is a plain parameter — not a call to the unrelated `communities`
CLI command).

Apply the same allowlist gate to identifier args that member_expression args
already use, in both the TS/WASM extractor (extractCallbackReferenceCalls,
shared by the walk and query extraction paths) and the native Rust mirror
(extract_callback_reference_calls). Legitimate callback-by-reference patterns
(e.g. arr.forEach(myCallback), router.use(handleToken)) are preserved since
their callees are already in the allowlist.

On codegraph's own repo this eliminates the two fabricated communities.ts
edges and the phantom 3-node cycle, and reduces the broader
dynamic=1/confidence=0.5/kind=calls edge signature from 342 to 14 (native)
across the whole graph.

Recalibrates the jelly-micro `classes` recall floor (6/31 -> 5/31): the one
lost edge (f4 -> f1, from `function f4(x) { return x(f1); }`) was only ever
matched because the removed heuristic fabricated it — `x` is an unresolvable
parameter call, syntactically identical to the false-positive shape this fix
removes, and only Jelly's points-to analysis can resolve it precisely.

Fixes #1741

Internal extractor/resolver bug fix — no new language support, CLI surface,
architecture, or roadmap changes. docs check acknowledged.

Impact: 1 functions changed, 6 affected
Follow-up refinement to #1741's identifier-argument gating. A peer audit of
the resolution-benchmark fixtures found two edges the naive name-only gate
would break:

- tests/benchmarks/resolution/fixtures/pts-javascript/array-from.js:
  `Array.from(arr, mapCallback)` — a legitimate, well-known stdlib callback
  pattern, not a name-collision false positive. `Array.from`'s callee name
  is `from`, which wasn't in CALLBACK_ACCEPTING_CALLEES at all, so the
  callback arg (mapCallback) was dropped.
- tests/benchmarks/resolution/fixtures/typescript/callbacks.ts:
  `processEach(users, logUser)` — logUser passed to a project-defined
  higher-order function. No name allowlist can enumerate arbitrary user
  code, so this class of edge is a genuine, harder gap (see below).

Fix Array.from properly rather than just adding 'from' to the general
allowlist: `Array.from(arrayLike, mapFn, thisArg)` puts the callback at
argument index 1, not 0 — naively allowlisting 'from' the same way as
'.map'/'.forEach' would treat `arrayLike` (plain data at index 0) as a
callback candidate too, reintroducing the exact name-collision false-positive
class #1741 fixes. Added POSITIONAL_CALLBACK_ARG_INDEX (TS) /
positional_callback_arg_index (Rust) so a callee can restrict eligibility to
one specific argument index instead of "any position" (the existing
behavior, still needed for variadic Express/Router middleware chains like
`app.get(path, mw1, mw2, handler)`). Applies uniformly to every TypedArray
constructor's .from (Uint8Array.from, Int32Array.from, etc.) since they share
the same signature convention.

This restores pts-javascript to 13/13 (100% recall/precision, matching its
pre-#1741 baseline exactly).

The processEach/filterThen case (arbitrary user-defined higher-order
functions) is NOT fixed here — recognizing it needs the callee's own
parameter type (function-shaped?), which is a resolver-level, cross-engine
feature, not a name/position extension of this gate. Left the 3 affected
expected-edges.json entries in typescript/expected-edges.json unchanged
(they're real, decidable facts, not fabricated edges) and documented the
gap in resolution-benchmark.test.ts's THRESHOLDS.typescript comment: recall
is now 44/47 (93.6%), still well above the 0.72 floor. Tracked as a
follow-up in issue #1845 (not fixed by this commit).

Verified via tests/benchmarks/resolution/resolution-benchmark.test.ts
(--reporter=verbose): pts-javascript 100%/100% (was 92.3% recall with the
naive gate), typescript 95.7%/93.6% (unchanged by this commit, gap tracked).
Cross-engine parity (native rebuilt + codesigned) and query/walk-path parity
both re-verified with new dedicated test cases.

Internal extractor/resolver refinement — no new language support, CLI
surface, architecture, or roadmap changes. docs check acknowledged.

Impact: 1 functions changed, 6 affected
`codegraph exports <file>` treated any file-level `reexports` edge as
proof that every export of the target file was re-exported, so a single
`export { X } from 'Y'` caused `reexportedSymbols` to dump all of Y's
exports (including symbols never mentioned in any reexport clause, and
symbols only ever imported as a type). The file-level edge only proves a
reexport *relationship* exists with a target file — it never carried the
specific symbol name(s).

Both engines now also emit a symbol-level `reexports` edge straight to the
specifically-named symbol for `export { X }` / `export { X as Z }`
clauses, mirroring the existing `imports-type` symbol-level edge from
#1724 (JS/WASM: build-edges.ts + incremental.ts watch-mode path; native:
import_edges.rs primary pipeline + build_edges.rs FFI fallback). The query
layer prefers these precise edges when present and only falls back to a
target's full export list when none exist — i.e. a genuine
`export * from 'Y'` wildcard, which really does re-export everything.

Fixes #1742

docs check acknowledged — internal query/edge-emission bug fix, no new
commands, languages, or architecture to document.

Impact: 14 functions changed, 14 affected
… complexity

storeCfgResults / storeNativeCfgResults in ast-analysis/engine.ts (and a
duplicate copy in domain/wasm-worker-entry.ts) overwrote the correctly
computed cyclomatic complexity with a CFG-derived value (edges - blocks + 2).
That formula doesn't model short-circuit logical operators (&&, ||, ??),
optional chaining (?.), or nested function/closure bodies, all of which the
AST-based cyclomatic walk correctly counts (matching cognitive complexity's
treatment of closures). The override ran on every WASM build and on native
builds whenever the Rust orchestrator was bypassed (e.g. an engine switch or
schema/version change triggers forceFullRebuild), silently corrupting
cyclomatic for any function using those constructs while leaving cognitive,
Halstead, and LOC untouched.

The native engine never had this override, so it was already correct.
Cyclomatic is now always the single AST-derived value on both engines.

Fixes #1743

Impact: 5 functions changed, 13 affected
Full builds always tag directly-resolved calls edges technique='ts-native'
(applied by both engines, not just native), either inline or via a
post-insert backfill. Two incremental-rebuild paths left it NULL instead:

- codegraph watch (rebuildFile/emitIncrementalCallEdges in
  builder/incremental.ts) never set technique at all when inserting a calls
  edge. Fixed with a scoped post-rebuild backfill, mirroring
  applyEdgeTechniquesAfterNativeInsert.
- codegraph build's native-orchestrator incremental path
  (backfillEdgeTechniquesAfterNativeOrchestrator) scoped its backfill to only
  the directly-changed files reported by Rust, missing one-hop reverse
  dependents whose outgoing edges into a changed file are reconnected by
  Rust's own reverse-dep cascade and so also carry a fresh, untagged
  technique. Fixed by expanding the scope to include them.

Rust itself never writes the technique column on any edge-insertion path
(confirmed across crates/codegraph-core) — it has always been the JS-side
backfill's job, so no native crate changes are needed.

No README/CLAUDE.md/ROADMAP.md updates needed — bug fix only, no new
architecture, commands, or language support (docs check acknowledged).

Fixes #1744

Impact: 4 functions changed, 9 affected
response.json() in embedRemote sat outside the try/catch guarding the
fetch call, so a 200 OK response with a malformed/non-JSON body (e.g.
an HTML error page from a misconfigured proxy) threw a raw uncaught
SyntaxError instead of the descriptive EngineError used by every other
failure mode in this function (timeout, network failure, non-2xx
status, bad response shape, dimension mismatch).

Fixes #1745

Impact: 1 functions changed, 9 affected
getDefaultUserConfigPath() and resolveUserConfigPath() each implemented
the same XDG_CONFIG_HOME / APPDATA / ~/.config three-way branch, so a
future change to the priority order or path shape had to be applied in
two places. Extract the branch into computePlatformDefaultConfigPath(),
called by both; resolveUserConfigPath() still layers its own existsSync
checks on top. Pure dedup — no behavior change.

Fixes #1746

Impact: 3 functions changed, 38 affected
@greptile-apps

greptile-apps Bot commented Jul 6, 2026

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Greptile Summary

This PR extracts the XDG / Windows / fallback three-way branch that was duplicated verbatim between getDefaultUserConfigPath() and resolveUserConfigPath() into a single private helper computePlatformDefaultConfigPath(home). Both callers now delegate the path-computation to the helper while preserving their own responsibility: the getDefault function still handles the CODEGRAPH_USER_CONFIG env var early-return, and resolveUserConfigPath still layers existsSync checks on top.

  • Extracted computePlatformDefaultConfigPath(home?) helper from src/infrastructure/config.ts — pure dedup of ~12 lines shared by two functions, with priority order (XDG → APPDATA → ~/.config) unchanged.
  • resolveUserConfigPath passes its already-computed home to the helper, avoiding a redundant os.homedir() call; getDefaultUserConfigPath uses the default parameter so the call site stays clean.

Confidence Score: 5/5

Safe to merge — pure deduplication with no logic changes.

The only changed file consolidates identical code into a shared helper. The priority order (XDG → APPDATA → ~/.config), the env-var early-returns, and the existsSync layering in resolveUserConfigPath are all preserved exactly. resolveUserConfigPath still passes its already-computed home to the helper, avoiding a redundant os.homedir() call, which is a minor improvement. There are no new code paths, no changed conditions, and no altered return values.

No files require special attention.

Important Files Changed

Filename Overview
src/infrastructure/config.ts Extracted shared helper computePlatformDefaultConfigPath; logic and priority order are preserved exactly; no behavioural changes.

Flowchart

%%{init: {'theme': 'neutral'}}%%
flowchart TD
    A1["getDefaultUserConfigPath()"] -->|"CODEGRAPH_USER_CONFIG set"| R1["return envPath"]
    A1 -->|"env var absent"| H["computePlatformDefaultConfigPath(home?)"]

    A2["resolveUserConfigPath()"] -->|"CODEGRAPH_USER_CONFIG set"| E2{"existsSync(envPath)"}
    E2 -->|"yes"| R2["return envPath"]
    E2 -->|"no"| R3["return null"]
    A2 -->|"env var absent"| HH["computePlatformDefaultConfigPath(home)"]

    H --> X{"XDG_CONFIG_HOME set?"}
    HH --> X
    X -->|"yes"| P1["$XDG_CONFIG_HOME/codegraph/config.json"]
    X -->|"no"| W{"win32?"}
    W -->|"yes + APPDATA set"| P2["%APPDATA%/codegraph/config.json"]
    W -->|"yes + APPDATA unset"| P3["~/.config/codegraph/config.json"]
    W -->|"no"| P3

    HH --> E3{"existsSync(platformDefault)"}
    E3 -->|"yes"| R4["return platformDefault"]
    E3 -->|"no"| L{"existsSync(legacyPath)"}
    L -->|"yes"| R5["return ~/.codegraph/config.json"]
    L -->|"no"| R6["return null"]
Loading
%%{init: {'theme': 'base', 'themeVariables': {"darkMode": true, "background": "#0d1117", "primaryColor": "#21262d", "primaryTextColor": "#e6edf3", "primaryBorderColor": "#8b949e", "lineColor": "#8b949e", "textColor": "#e6edf3", "edgeLabelBackground": "#161b22", "actorBkg": "#21262d", "actorBorder": "#8b949e", "actorTextColor": "#e6edf3", "actorLineColor": "#8b949e", "signalColor": "#8b949e", "signalTextColor": "#e6edf3", "noteBkgColor": "#373320", "noteBorderColor": "#d4a72c", "noteTextColor": "#f0e6c0", "labelBoxBkgColor": "#21262d", "labelBoxBorderColor": "#8b949e", "labelTextColor": "#e6edf3", "loopTextColor": "#e6edf3", "activationBkgColor": "#30363d", "activationBorderColor": "#8b949e"}}}%%
flowchart TD
    A1["getDefaultUserConfigPath()"] -->|"CODEGRAPH_USER_CONFIG set"| R1["return envPath"]
    A1 -->|"env var absent"| H["computePlatformDefaultConfigPath(home?)"]

    A2["resolveUserConfigPath()"] -->|"CODEGRAPH_USER_CONFIG set"| E2{"existsSync(envPath)"}
    E2 -->|"yes"| R2["return envPath"]
    E2 -->|"no"| R3["return null"]
    A2 -->|"env var absent"| HH["computePlatformDefaultConfigPath(home)"]

    H --> X{"XDG_CONFIG_HOME set?"}
    HH --> X
    X -->|"yes"| P1["$XDG_CONFIG_HOME/codegraph/config.json"]
    X -->|"no"| W{"win32?"}
    W -->|"yes + APPDATA set"| P2["%APPDATA%/codegraph/config.json"]
    W -->|"yes + APPDATA unset"| P3["~/.config/codegraph/config.json"]
    W -->|"no"| P3

    HH --> E3{"existsSync(platformDefault)"}
    E3 -->|"yes"| R4["return platformDefault"]
    E3 -->|"no"| L{"existsSync(legacyPath)"}
    L -->|"yes"| R5["return ~/.codegraph/config.json"]
    L -->|"no"| R6["return null"]
Loading

Reviews (2): Last reviewed commit: "fix: resolve merge conflicts with main (..." | Re-trigger Greptile

@github-actions

github-actions Bot commented Jul 6, 2026

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Codegraph Impact Analysis

3 functions changed38 callers affected across 24 files

  • computePlatformDefaultConfigPath in src/infrastructure/config.ts:297 (13 transitive callers)
  • getDefaultUserConfigPath in src/infrastructure/config.ts:322 (3 transitive callers)
  • resolveUserConfigPath in src/infrastructure/config.ts:340 (35 transitive callers)

Base automatically changed from fix/issue-1745-remote-embed-json-error to main July 6, 2026 13:48
@carlos-alm carlos-alm merged commit 2ba5852 into main Jul 6, 2026
50 of 56 checks passed
@carlos-alm carlos-alm deleted the fix/issue-1746-config-dedupe-platform-path branch July 6, 2026 14:52
@github-actions github-actions Bot locked and limited conversation to collaborators Jul 6, 2026
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config.ts: dedupe platform-default-path computation (getDefaultUserConfigPath / resolveUserConfigPath)

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