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Template generation pipeline crashing on the Compute Canada cluster

Status: Open.

#86 In neuropoly/template;

· rohanbanerjee opened on Apr 4, 2024

The derivatives are not copied after the preprocess_segment.sh runs

Status: Open.

#74 In neuropoly/template;

· rohanbanerjee opened on Aug 9, 2023

Add first_disc option to configuration_default.json

Status: Open.

#64 In neuropoly/template;

· NadiaBlostein opened on Aug 7, 2023

Update to stable version of SCT

Status: Open.

#63 In neuropoly/template;

· NadiaBlostein opened on Aug 7, 2023

figure out what is going with ICBM152 in preprocess_normalize.py

Status: Open.

#55 In neuropoly/template;

· NadiaBlostein opened on Jul 10, 2023

Make sure the comments description each function in preprocess_normalize are correct

Status: Open.

#54 In neuropoly/template;

· NadiaBlostein opened on Jul 10, 2023

pep-8 python code style convention

Status: Open.

#49 In neuropoly/template;

· rohanbanerjee opened on Jul 6, 2023

Make schematic of worflow

Status: Open.

#48 In neuropoly/template;

· jcohenadad opened on Jul 6, 2023

Make the preprocessing pipeline rely on SC segmentation OR centerline

Status: Open.

#33 In neuropoly/template;

· jcohenadad opened on Jun 29, 2023

Centerline extraction should not be done in template_preprocessing.py

Status: Open.

#32 In neuropoly/template;

· jcohenadad opened on Jun 29, 2023

Make data-agnostic versions of scripts have suffix _default

Status: Open.

#27 In neuropoly/template;

· NadiaBlostein opened on Jun 29, 2023

SCT version - update to the stable version

Status: Open.

#23 In neuropoly/template;

· rohanbanerjee opened on Jun 27, 2023