fix: set correct inputs in the workflow and update pre-commit

[ycexiao]

What problem does this PR address?

The release workflow fails: https://github.com/diffpy/diffpy.apps/actions/runs/25579571766

Set correct inputs in the workflow file
Update pre-commit
Remove deprecated workflow.

What should the reviewer(s) do?

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.11%. Comparing base (b656716) to head (fb9b340).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #22   +/-   ##
=======================================
  Coverage   94.11%   94.11%           
=======================================
  Files           5        5           
  Lines         187      187           
=======================================
  Hits          176      176           
  Misses         11       11           

Files with missing lines	Coverage Δ
tests/helper.py	96.87% <ø> (ø)

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