chore(deps): Upgrade geopandas, pyopenssl, pillow and black

[m1so]

Summary by CodeRabbit

• Chores
  • Added PyOpenSSL (>=26.0.0) and Pillow (>=12.2.0) as new dependencies.
  • Updated Black (>=26.3.1) and GeoPandas (>=1.1.2) to newer versions.
  • Updated CI security vulnerability scanning configuration.

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

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Configuration used: Organization UI

Review profile: ASSERTIVE

Plan: Pro

Run ID: 76b68a81-15b9-417d-a07f-9e5ad00d50e4

📥 Commits

Reviewing files that changed from the base of the PR and between 2f33a6b and c441974.

⛔ Files ignored due to path filters (1)

• poetry.lock is excluded by !**/*.lock

📒 Files selected for processing (19)

• .github/workflows/ci.yml
• deepnote_core/resources/jupyter/jupyter_server_config.py
• deepnote_toolkit/config.py
• deepnote_toolkit/ocelots/pyspark/implementation.py
• deepnote_toolkit/runtime_initialization.py
• dockerfiles/builder/constraintsgen.py
• installer/module/constants.py
• installer/module/downloader.py
• installer/module/kernels.py
• installer/module/symlinks.py
• installer/module/types.py
• installer/module/virtual_environment.py
• pyproject.toml
• tests/integration/test_deepnote_toolkit_cli_integration.py
• tests/unit/test_cli_config.py
• tests/unit/test_config.py
• tests/unit/test_get_webapp_url.py
• tests/unit/test_set_notebook_path_config.py
• tests/unit/test_toolkit_config.py

💤 Files with no reviewable changes (1)

• .github/workflows/ci.yml

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📝 Walkthrough

Walkthrough

This PR removes three CVEs from the CI vulnerability ignore list, normalizes docstring formatting across nine Python modules by trimming extraneous whitespace, refactors test file setup invocations to single-line calls, and updates project dependencies. Changes include adding pyopenssl and pillow, bumping black to a newer version, and unifying geopandas constraints across Python version conditionals.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~12 minutes

🚥 Pre-merge checks | ✅ 3 | ❌ 1

❌ Failed checks (1 warning)

Check name	Status	Explanation	Resolution
Docstring Coverage	⚠️ Warning	Docstring coverage is 43.75% which is insufficient. The required threshold is 80.00%.	Write docstrings for the functions missing them to satisfy the coverage threshold.

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	Title accurately reflects the main changes: dependency version updates for geopandas, pyopenssl, pillow, and black across multiple files.
Updates Docs	✅ Passed	PR contains only dependency updates, docstring formatting, and CI cleanup with no new features or functionality.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

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[github-actions]

📦 Python package built successfully!

• Version: 2.2.0.dev10+9375529
• Wheel: deepnote_toolkit-2.2.0.dev10+9375529-py3-none-any.whl
• Install:

  pip install "deepnote-toolkit @ https://deepnote-staging-runtime-artifactory.s3.amazonaws.com/deepnote-toolkit-packages/2.2.0.dev10%2B9375529/deepnote_toolkit-2.2.0.dev10%2B9375529-py3-none-any.whl"

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 74.32%. Comparing base (2f33a6b) to head (c441974).
⚠️ Report is 1 commits behind head on main.
✅ All tests successful. No failed tests found.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #94   +/-   ##
=======================================
  Coverage   74.32%   74.32%           
=======================================
  Files          94       94           
  Lines        5535     5535           
  Branches      824      824           
=======================================
  Hits         4114     4114           
  Misses       1155     1155           
  Partials      266      266           

Flag	Coverage Δ
combined	74.32% <ø> (ø)

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[deepnote-bot]

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[tkislan]

Tested bigquery and snowflake in RA