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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Jiwen Zhao - Bioinformatics and Crop Disease Researcher</title>
<meta name="description" content="Jiwen Zhao, bioinformatics and crop disease researcher at Yazhouwan National Laboratory, focusing on wheat genetics, crop disease resistance, and reproducible scientific visualization.">
<meta name="author" content="Jiwen Zhao">
<link rel="canonical" href="https://cropcoder.github.io/">
<meta property="og:type" content="website">
<meta property="og:title" content="Jiwen Zhao - Bioinformatics and Crop Disease Researcher">
<meta property="og:description" content="Bioinformatics and crop disease research on wheat genetics, resistance loci, and reproducible scientific visualization.">
<meta property="og:url" content="https://cropcoder.github.io/">
<meta property="og:image" content="https://cropcoder.github.io/images/zhaojiwen-fangxing.jpg">
<meta property="og:locale" content="en_US">
<meta name="twitter:card" content="summary_large_image">
<link rel="icon" href="images/favicon.ico">
<link rel="apple-touch-icon" href="images/apple-touch-icon.png">
<link rel="stylesheet" href="assets/css/resume.css">
</head>
<body>
<header class="site-header" data-header>
<a class="brand" href="#home" aria-label="Jiwen Zhao home">Jiwen Zhao</a>
<button class="nav-toggle" type="button" aria-expanded="false" aria-controls="site-nav" data-nav-toggle>
<span></span>
<span></span>
<span></span>
<span class="sr-only">Menu</span>
</button>
<nav id="site-nav" class="site-nav" data-nav aria-label="Primary">
<a href="#home">Home</a>
<a href="#education">Education</a>
<a href="#research">Research</a>
<a href="#life">Life</a>
<a href="#publications">Publications</a>
<a href="#resources">Resources</a>
<a href="blog/gwas-analysis.html">Blog</a>
<a href="#contact">Contact</a>
</nav>
</header>
<main>
<div id="home" class="scroll-anchor"></div>
<section class="hero section">
<div class="hero-copy">
<p class="section-kicker">CAS</p>
<h1>Jiwen Zhao</h1>
<p class="hero-role">Ph.D. in Genetics, Chinese Academy of Sciences</p>
<ul class="contact-lines" aria-label="Profile details">
<li>
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M4 21V9l8-6 8 6v12h-5v-7H9v7H4Zm2-2h1v-7h10v7h1V10l-6-4.5L6 10v9Z"/></svg>
Yazhouwan National Laboratory, China
</li>
<li>
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M12 22s7-6.1 7-13A7 7 0 1 0 5 9c0 6.9 7 13 7 13Zm0-10.5A2.5 2.5 0 1 1 12 6a2.5 2.5 0 0 1 0 5.5Z"/></svg>
Sanya, Hainan, China
</li>
<li>
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M20 4H4a2 2 0 0 0-2 2v12a2 2 0 0 0 2 2h16a2 2 0 0 0 2-2V6a2 2 0 0 0-2-2Zm-.4 4.25-7.07 4.42a1 1 0 0 1-1.06 0L4.4 8.25 5.46 6.56 12 10.65l6.54-4.09 1.06 1.69Z"/></svg>
<a href="mailto:zhaojiwen@yzwlab.cn">zhaojiwen@yzwlab.cn</a>
</li>
</ul>
<p class="hero-summary">I work at the interface of bioinformatics, crop disease biology, and wheat genetics, translating population genomics, resistance loci, and multi-omics evidence into practical resources for crop disease resistance breeding.</p>
<div class="hero-actions">
<a class="button button-primary" href="mailto:zhaojiwen@yzwlab.cn">Connect to Email</a>
<a class="button button-secondary" href="https://scholar.google.com/citations?user=wOeWxxUAAAAJ">Google Scholar</a>
</div>
</div>
<aside class="profile-card" aria-label="Profile summary">
<img src="images/zhaojiwen-fangxing.jpg" alt="Jiwen Zhao portrait" decoding="async" width="300" height="300">
<div class="metric-grid">
<div><strong>7</strong><span>Selected papers</span></div>
<div><strong>108+</strong><span>Citations listed</span></div>
<div><strong>26</strong><span>Recent works</span></div>
<div><strong>3</strong><span>Research themes</span></div>
</div>
</aside>
</section>
<section id="education" class="section" aria-labelledby="education-heading">
<div class="section-heading">
<p class="section-kicker">Education</p>
<h2 id="education-heading">Academic training</h2>
</div>
<div class="edu-timeline">
<article class="edu-card">
<div class="edu-marker">
<span class="edu-degree">Doctor of Philosophy</span>
<span class="edu-year">2025 – Present</span>
</div>
<div class="edu-body">
<h3>Genetics</h3>
<p class="edu-school">University of Chinese Academy of Sciences</p>
<p>Focused on crop disease resistance, actively engaging with cutting-edge advances in plant immunity while grounding research in both theory and practice. Developed expertise in NLR pan-genomics and applied machine learning and artificial intelligence techniques to crop disease resistance research, integrating computational approaches with biological discovery.</p>
</div>
</article>
<article class="edu-card">
<div class="edu-marker">
<span class="edu-degree">Master of Science</span>
<span class="edu-year">2022 – 2025</span>
</div>
<div class="edu-body">
<h3>Crop Bioinformatics</h3>
<p class="edu-school">College of Agronomy, Northwest A&F University</p>
<p>Joined the Wheat Disease Resistance Genetics and Molecular Breeding group, focusing on mining stripe rust resistance loci via bioinformatics approaches and characterizing the utilization patterns and trends of resistance loci across different breeding regions and eras. Completed coursework in crop bioinformatics and phenomics.</p>
<div class="edu-visiting">
<div class="edu-visiting-item">
<span class="edu-visiting-label">Visiting Student</span>
<strong>Yazhouwan Seed Laboratory</strong>
<p>Conducted population genetics analyses of wheat resequencing data and genome-wide association studies (GWAS) for resistance traits during the second year of the master's program.</p>
</div>
<div class="edu-visiting-item">
<span class="edu-visiting-label">Visiting Student</span>
<strong>Yazhouwan National Laboratory</strong>
<p>Led wheat NLR pan-genome analysis, curated and annotated NLR sequences from over 40 published wheat genome assemblies, and performed variant discovery on resequencing data to identify candidate resistance genes during the final year.</p>
</div>
</div>
</div>
</article>
<article class="edu-card">
<div class="edu-marker">
<span class="edu-degree">Bachelor of Science</span>
<span class="edu-year">2018 – 2022</span>
</div>
<div class="edu-body">
<h3>Agronomy</h3>
<p class="edu-school">College of Agronomy and Biotechnology, Southwest University</p>
<p>Built a strong foundation through core coursework in genetics, crop breeding, and molecular biology. Completed a research internship at the Chongqing Potato Research Institute, where the primary focus was on the effects of water stress on sweet potato cultivation. Acquired essential laboratory and field research skills, deepening both practical agronomic knowledge and a lasting interest in crop genetics and breeding — which motivated the decision to pursue graduate studies in the field.</p>
</div>
</article>
</div>
</section>
<section id="research" class="section" aria-labelledby="research-heading">
<div class="section-heading">
<p class="section-kicker">Research Focus</p>
<h2 id="research-heading">Computational biology & AI</h2>
</div>
<div class="focus-grid">
<article>
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M4 19c4.8-.6 8.7-2.6 11.6-5.9C18 10.4 19.4 7 20 3c-4 .6-7.4 2-10.1 4.4C6.6 10.3 4.6 14.2 4 19Zm2.4-2.4c.7-3 2.3-5.6 4.8-7.7 1.7-1.5 3.8-2.5 6.2-3.1-.6 2.4-1.6 4.5-3.1 6.2-2.1 2.4-4.7 4.1-7.9 4.6ZM4 21h16v-2H4v2Z"/></svg>
<h3>Crop Disease Resistance</h3>
<p>Discovery and interpretation of resistance loci, superior alleles, and candidate genes for wheat yellow rust and related disease systems.</p>
</article>
<article>
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M12 3 3 8l9 5 9-5-9-5Zm-5 9.1-4 2.2 9 5 9-5-4-2.2-5 2.8-5-2.8Z"/></svg>
<h3>Bioinformatics Platforms</h3>
<p>Knowledge resources and analysis workflows that make resistance genes, QTL evidence, and breeding information easier to query.</p>
</article>
<article>
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M4 19h16v2H4v-2Zm2-3h3V8H6v8Zm5 0h3V4h-3v12Zm5 0h3v-6h-3v6Z"/></svg>
<h3>Reproducible Visualization</h3>
<p>Scientific visualization and reproducible analysis workflows for biomedical and agricultural data interpretation.</p>
</article>
</div>
</section>
<section id="life" class="section" aria-labelledby="life-heading">
<div class="section-heading">
<p class="section-kicker">Life</p>
<h2 id="life-heading">Learning, writing & building</h2>
</div>
<div class="life-grid">
<article class="life-card">
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M14 2H6a2 2 0 0 0-2 2v16a2 2 0 0 0 2 2h12a2 2 0 0 0 2-2V8l-6-6ZM6 20V4h7v5h5v11H6Z"/><path d="M8 12h8v2H8v-2Zm0 4h8v2H8v-2Zm0-8h5v2H8V8Z"/></svg>
<h3>Technical Writing</h3>
<p>Authored 180+ bioinformatics analysis notes on <a href="https://blog.csdn.net/ZaoJewin">CSDN</a> with 300K+ cumulative reads, covering genomics, population genetics, transcriptomics, bioinformatics tools, and R statistical programming.</p>
</article>
<article class="life-card">
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2Zm-2 15-5-5 1.41-1.41L10 14.17l7.59-7.59L19 8l-9 9Z"/></svg>
<h3>Learning & Reflection</h3>
<p>Regularly summarizing and reviewing research progress, organizing personal notes, and iteratively refining a knowledge framework. Revisiting bioinformatics challenges and solutions to deepen understanding and improve analytical workflows.</p>
</article>
<article class="life-card">
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M16 11c1.66 0 2.99-1.34 2.99-3S17.66 5 16 5c-1.66 0-3 1.34-3 3s1.34 3 3 3Zm-8 0c1.66 0 2.99-1.34 2.99-3S9.66 5 8 5C6.34 5 5 6.34 5 8s1.34 3 3 3Zm0 2c-2.33 0-7 1.17-7 3.5V19h14v-2.5c0-2.33-4.67-3.5-7-3.5Zm8 0c-.29 0-.62.02-.97.05 1.16.84 1.97 1.97 1.97 3.45V19h6v-2.5c0-2.33-4.67-3.5-7-3.5Z"/></svg>
<h3>Knowledge Sharing</h3>
<p>Driven by passion and curiosity, actively sharing learning experiences and exchanging ideas with peers. Bridging scientific questions with practical skills through continuous learning in statistics and multi-omics data analysis.</p>
</article>
<article class="life-card">
<svg viewBox="0 0 24 24" aria-hidden="true"><path d="M22 18v-2H8v2h14ZM4 16v-2H2v2h2Zm18-6v-2H8v2h14ZM4 8V6H2v2h2Zm18-2V4H8v2h14ZM4 2v2H2V2h2Z"/><path d="M2 20h2v2H2v-2Zm4 0h2v2H6v-2Zm4 0h2v2h-2v-2Z"/></svg>
<h3>Tool Development</h3>
<p>Contributed to team-built batch analysis pipelines for wheat disease resistance genes, including haplotype analysis tools and candidate gene variant site analysis, with a strong interest in statistical approaches to biological big data.</p>
</article>
</div>
</section>
<section id="publications" class="section publications-section" aria-labelledby="publications-heading">
<div class="section-heading publication-heading">
<div>
<p class="section-kicker">Selected Publications</p>
<h2 id="publications-heading">Recent papers and resources</h2>
</div>
<a class="text-link" href="https://scholar.google.com/citations?user=wOeWxxUAAAAJ">View Google Scholar</a>
</div>
<article class="featured-publication">
<img src="images/LWRR.png" alt="Landscape of Wheat Rust Resistance platform preview" loading="lazy" decoding="async" width="640" height="400">
<div>
<span class="journal-label">Stress Biology 2025</span>
<h3><a href="https://doi.org/10.1007/s44154-025-00232-x">LWRR: Landscape of Wheat Rust Resistance towards practical breeding design</a></h3>
<p><strong>Jiwen Zhao</strong>, Haitao Dong, Jinyu Han, Jingrui Ou, Tiantian Chen, Yuze Wang, Shengjie Liu, Rui Yu, Zhensheng Kang, Dejun Han, Qingdong Zeng, Xiaojie Wang, Shengwei Ma and Jianhui Wu.</p>
<a class="text-link" href="https://wheat.dftianyi.com">Visit LWRR</a>
</div>
</article>
<ol class="publication-list">
<li>
<div>
<h3><a href="https://scholar.google.com/citations?view_op=view_citation&hl=zh-CN&user=wOeWxxUAAAAJ&citation_for_view=wOeWxxUAAAAJ:roLk4NBRz8UC">A regulatory network promotes apoplastic alkalinization to prime plant immunity in tissues distal to site of infection</a></h3>
<p>H Wang, X Li, K Zhai, J Rhodes, T Sang, <strong>J Zhao</strong>, Y Gao, S Ma, B Song, et al.</p>
</div>
<span class="journal-label">Cell 2026</span>
</li>
<li>
<div>
<h3><a href="https://scholar.google.com/citations?view_op=view_citation&hl=zh-CN&user=wOeWxxUAAAAJ&citation_for_view=wOeWxxUAAAAJ:Se3iqnhoufwC">Genomics-driven discovery of superior alleles and genes for yellow rust resistance in wheat</a></h3>
<p>J Wu, S Ma, J Niu, W Sun, H Dong, S Zheng, <strong>J Zhao</strong>, S Liu, R Yu, Y Li, et al.</p>
</div>
<span class="journal-label">Nature Genetics 2025</span>
</li>
<li>
<div>
<h3><a href="https://scholar.google.com/citations?view_op=view_citation&hl=zh-CN&user=wOeWxxUAAAAJ&citation_for_view=wOeWxxUAAAAJ:ufrVoPGSRksC">ImageGP 2 for enhanced data visualization and reproducible analysis in biomedical research</a></h3>
<p>T Chen, YX Liu, T Chen, M Yang, S Fan, M Shi, B Wei, H Lv, W Cao, et al.</p>
</div>
<span class="journal-label">iMeta 2024</span>
</li>
<li>
<div>
<h3><a href="https://scholar.google.com/citations?view_op=view_citation&hl=zh-CN&user=wOeWxxUAAAAJ&citation_for_view=wOeWxxUAAAAJ:UebtZRa9Y70C">The wheat Yr6 locus, allelic to Pm5, harbors an NLR gene pair conferring stripe rust resistance</a></h3>
<p>W Sun, H Dong, S Liu, S Ma, Q Zeng, J Li, K Ke, W Yue, W Zhang, X Fang, et al.</p>
</div>
<span class="journal-label">Plant Communications 2026</span>
</li>
<li>
<div>
<h3><a href="https://scholar.google.com/citations?view_op=view_citation&hl=zh-CN&user=wOeWxxUAAAAJ&citation_for_view=wOeWxxUAAAAJ:W7OEmFMy1HYC">Genetic dissection and identification of stripe rust resistance genes in the wheat cultivar Lanhangxuan 121</a></h3>
<p>Q Wu, L Liu, D Zhang, C Li, R Nie, J Duan, J Wan, <strong>J Zhao</strong>, J Cao, D Liu, et al.</p>
</div>
<span class="journal-label">Molecular Breeding 2024</span>
</li>
<li>
<div>
<h3><a href="https://scholar.google.com/citations?view_op=view_citation&hl=zh-CN&user=wOeWxxUAAAAJ&citation_for_view=wOeWxxUAAAAJ:hqOjcs7Dif8C">Genome-wide association mapping and candidate genes analysis of high-throughput image descriptors for wheat frost tolerance</a></h3>
<p>R Yu, Y Liu, M Yuan, P Jiang, <strong>J Zhao</strong>, C Zhang, X Xu, Q Wang, Y Wang, et al.</p>
</div>
<span class="journal-label">Stress Biology 2025</span>
</li>
</ol>
</section>
<section id="resources" class="section" aria-labelledby="resources-heading">
<div class="section-heading">
<p class="section-kicker">Tools and Resources</p>
<h2 id="resources-heading">Research outputs and profiles</h2>
</div>
<div class="resource-grid">
<a href="https://wheat.dftianyi.com">
<strong>LWRR</strong>
<span>Landscape of Wheat Rust Resistance towards practical breeding design.</span>
</a>
<a href="https://github.com/CropCoder">
<strong>GitHub</strong>
<span>Open-source bioinformatics utilities and project work.</span>
</a>
<a href="https://www.researchgate.net/profile/Jiwen-Zhao-3">
<strong>ResearchGate</strong>
<span>Research profile and publication record.</span>
</a>
<a href="https://pubmed.ncbi.nlm.nih.gov/?term=Zhao+J&cauthor_id=39429882">
<strong>PubMed</strong>
<span>Biomedical publication indexing and coauthor records.</span>
</a>
<a href="blog/gwas-analysis.html">
<strong>GWAS Blog</strong>
<span>A practical note on association mapping, quality control, model choice, and candidate gene interpretation.</span>
</a>
</div>
</section>
<section id="contact" class="section contact-section" aria-labelledby="contact-heading">
<div>
<p class="section-kicker">Contact</p>
<h2 id="contact-heading">Collaboration welcome</h2>
<p>For collaboration on crop disease resistance, wheat genomics, scientific visualization, or bioinformatics platform development, please get in touch.</p>
</div>
<a class="button button-primary" href="mailto:zhaojiwen@yzwlab.cn">Hi ~ I am Jiwen Zhao</a>
</section>
</main>
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