From 2e996635ae0b81b36b3bb94b4fc0d5cc79661ab5 Mon Sep 17 00:00:00 2001 From: alxndrdiaz Date: Wed, 22 Apr 2026 21:49:10 -0600 Subject: [PATCH 1/2] add SNaQ --- snaq/1.1.1/Dockerfile | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 snaq/1.1.1/Dockerfile diff --git a/snaq/1.1.1/Dockerfile b/snaq/1.1.1/Dockerfile new file mode 100644 index 00000000..1aa83689 --- /dev/null +++ b/snaq/1.1.1/Dockerfile @@ -0,0 +1,26 @@ +FROM biocontainers/biocontainers:v1.0.0_cv5 + +LABEL base_image="biocontainers:v1.0.0_cv5" +LABEL version="1" +LABEL software="SNaQ" +LABEL software.version="1.1.1" +LABEL about.summary="Maximum pseudolikelihood estimation of species network" +LABEL about.home="https://github.com/JuliaPhylo/SNaQ.jl" +LABEL about.documentation="https://juliaphylo.github.io/SNaQ.jl/dev/" +LABEL about.license_file="https://github.com/JuliaPhylo/SNaQ.jl/blob/main/LICENSE" +LABEL about.license="MIT License" +LABEL extra.identifiers.biotools="snaq" +LABEL about.tags="Phylogenetics" + +MAINTAINER Alexander Ramos-Diaz + +ENV DEBIAN_FRONTEND=noninteractive + +RUN curl -fsSL https://install.julialang.org | sh -s -- -y + +ENV PATH="/home/biodocker/.juliaup/bin:$PATH" + +RUN julia -e 'using Pkg; Pkg.add(name="SNaQ", version="1.1.1")' && \ + julia -e 'using SNaQ' + +CMD ["julia"] \ No newline at end of file From a6d5f9017eae344c2a9caa6e5b36450796579a64 Mon Sep 17 00:00:00 2001 From: alxndrdiaz Date: Thu, 23 Apr 2026 16:39:57 -0600 Subject: [PATCH 2/2] remove unused files --- snaq/1.1.1/Dockerfile | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/snaq/1.1.1/Dockerfile b/snaq/1.1.1/Dockerfile index 1aa83689..11e0589f 100644 --- a/snaq/1.1.1/Dockerfile +++ b/snaq/1.1.1/Dockerfile @@ -20,7 +20,4 @@ RUN curl -fsSL https://install.julialang.org | sh -s -- -y ENV PATH="/home/biodocker/.juliaup/bin:$PATH" -RUN julia -e 'using Pkg; Pkg.add(name="SNaQ", version="1.1.1")' && \ - julia -e 'using SNaQ' - -CMD ["julia"] \ No newline at end of file +RUN julia -e 'using Pkg; Pkg.add(name="SNaQ", version="1.1.1")' \ No newline at end of file